DNA-Seq of Pyrus for Hi-C: yellowed tender leaf - SRA

SRX5740572: DNA-Seq of Pyrus for Hi-C: yellowed tender leaf
1 ILLUMINA (HiSeq X Ten) run: 22.7M spots, 6.8G bases, 2.4Gb downloads

Design: Paired-end in situ HiC for chromosome conformation capture in the yellowed leaves on an Illumina HiSeq X-Ten.

Submitted by: Research Institute of Pomology, Chinese Academy of Agricultural Sciences

Study: Pyrus betulifolia Genome sequencing and assembly

PRJNA529328 • SRP193928 • All experiments • All runs

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China is the origin and evolution centre of Oriental pears. Pyrus betulaefolia is a wild species native to China, distributed in its northern region and widely used as rootstock. Here, we report the de novo assembly of the genome for P. betulaefolia 'Shanxi Duli 1' using an integrated strategy combining PacBio sequencing, BioNano mapping, and Hi-C mapping. The genome assembly size is 532.7 Mb, with a contig N50 of 1.57 Mb. A total of 59,552 protein-coding genes and 247.4 Mb of repetitive sequences were annotated for this genome.

Sample: Plant sample from Pyrus betulaefolia

SAMN11264821 • SRS4676114 • All experiments • All runs

Organism: Pyrus betulifolia

Library:

Name: Hic 1

Instrument: HiSeq X Ten

Strategy: Hi-C

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 22.7M spots, 6.8G bases, 2.4Gb

Run	# of Spots	# of Bases	Size	Published
SRR8961022	22,740,578	6.8G	2.4Gb	2020-05-24

ID:: 7728659

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